The Origin of Protein Sidechain Order Parameter Distributions
Publication information:
Best R, Clarke J, Karplus M. The Origin of Protein Sidechain Order Parameter Distributions. Journal of the American Chemical Society. 2004;126(25):7734–7735.
Abstract
Previous work by Wand et al. (2001) showed that the NMR order parameters characterizing the amplitude of motion of protein side chains seemed to form a multimodal distribution. At the time, no detailed explanation of this at the mol. level was offered, yet three classes of motion were inferred. We have analyzed a larger published data set and found that, although the distribution is multimodal, the evidence for three classes is weak. More significantly, we have been able to provide a simple phys. explanation for the distributions based on the results of mol. dynamics simulations. This result will aid in the interpretation of data from NMR dynamics expts,