The Origin of Protein Sidechain Order Parameter Distributions

Publication information:

Best R, Clarke J, Karplus M. The Origin of Protein Sidechain Order Parameter Distributions. Journal of the American Chemical Society. 2004;126(25):7734–7735.

Abstract

Previous work by Wand et al. (2001) showed that the NMR order parameters characterizing the amplitude of motion of protein side chains seemed to form a multimodal distribution.  At the time, no detailed explanation of this at the mol. level was offered, yet three classes of motion were inferred.  We have analyzed a larger published data set and found that, although the distribution is multimodal, the evidence for three classes is weak.  More significantly, we have been able to provide a simple phys. explanation for the distributions based on the results of mol. dynamics simulations.  This result will aid in the interpretation of data from NMR dynamics expts,